About Basic Search Advanced Search Downloads

© 2019-2022 Kanadia Lab,
PNB, Uconn

Construction by: Audrey Weber

Contact Us

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_3_76777125_76779583_R

Intron Information:

Intron Rank:
4
Intron Class:
major-like
Intron Phase:
1
Intron Coordinates:
76777125 - 76779583
Intron Length:
2459

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
TCG|GTATGCTCA
5'SS Class:
weak_major
3'SS Sequence:
TTCCCTTACACAG|A
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TACAGAT
U12 Branch Point Sequence:
TTTCCCTTACAC
Flanking Amino Acid:
EKPKSSSSALDFRNDKEAKI
Intron Amino Acid Position:
502

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
72.2
0.52
1.1
61.6
39.7
Major BPS
66.3
0.41
1
61
37.5
Major PPT
76.4
0.59
0.8
72
31.5
Minor 5ss
52.6
0.09
2.3
65.8
45.3
Minor BPS
65.1
0.45
1.7
77.42
38

Associated Gene:

Gene:
KLF11
Ensembl Gene ID:
ENSAPLG00000009146
Chromosome:
3

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000009521
76775649 - 76786566
10918