About Basic Search Advanced Search Downloads

© 2019-2022 Kanadia Lab,
PNB, Uconn

Construction by: Audrey Weber

Contact Us

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_3_76789304_76790196_R

Intron Information:

Intron Rank:
15
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
76789304 - 76790196
Intron Length:
893

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AGG|GTGAGTATG
5'SS Class:
strong_major
3'SS Sequence:
TTTATTTTTCCAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTTTTAT
U12 Branch Point Sequence:
TGATTTTTATTT
Flanking Amino Acid:
IGKIFKKCKKGILVNMDDNI
Intron Amino Acid Position:
601

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
83.6
0.79
0.9
77.8
38.7
Major BPS
96.5
1.15
0.6
86
34.2
Major PPT
91.7
0.94
0.7
84.7
35.8
Minor 5ss
33.5
-1.9
2.8
34.2
41.4
Minor BPS
58.8
0.35
1.5
72.71
38.8

Associated Gene:

Gene:
GRHL1
Ensembl Gene ID:
ENSAPLG00000008667
Chromosome:
3

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000047531
76789159 - 76815435
26277
ENSAPLT00000025469
76789189 - 76813639
24451
ENSAPLT00000009048
76789189 - 76814943
25755