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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_3_7679177_7679699_R

Intron Information:

Intron Rank:
9
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
7679177 - 7679699
Intron Length:
523

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
TCG|GTAAGGCTC
5'SS Class:
strong_major
3'SS Sequence:
TGTTTGTTTTCAG|A
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
CTTTCAT
U12 Branch Point Sequence:
ATGTGTTCAACC
Flanking Amino Acid:
DKSTLRRHTSIHDKNTPWKS
Intron Amino Acid Position:
1477

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
80.2
0.71
1
68.2
43
Major BPS
87.6
0.93
0.9
89.3
26
Major PPT
87
0.83
0.8
84.6
36
Minor 5ss
35.8
-1.6
3.5
51.7
45
Minor BPS
51
0.01
2
64.63
41.3

Associated Gene:

Gene:
GZF1
Ensembl Gene ID:
ENSAPLG00000027566
Chromosome:
3

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000033890
7677753 - 7697299
19547