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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_3_76792595_76793712_R

Intron Information:

Intron Rank:
11
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
76792595 - 76793712
Intron Length:
1118

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAC|GTAAGCACC
5'SS Class:
major
3'SS Sequence:
TTGTTTTTAAAAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
AATAAAT
U12 Branch Point Sequence:
TTGTTTTTAAAA
Flanking Amino Acid:
HFANLQRGAHVLPVASEELE
Intron Amino Acid Position:
509

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
73.1
0.54
1.3
69.7
41.3
Major BPS
65.7
0.39
1
71.3
30.3
Major PPT
72.2
0.5
1.1
75.7
37.3
Minor 5ss
42
-0.9
2.8
52.9
37.1
Minor BPS
70.1
0.63
1.3
75.76
35.6

Associated Gene:

Gene:
GRHL1
Ensembl Gene ID:
ENSAPLG00000008667
Chromosome:
3

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000047531
76789159 - 76815435
26277
ENSAPLT00000025469
76789189 - 76813639
24451
ENSAPLT00000009048
76789189 - 76814943
25755