About Basic Search Advanced Search Downloads

© 2019-2022 Kanadia Lab,
PNB, Uconn

Construction by: Audrey Weber

Contact Us

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_3_76793853_76795255_R

Intron Information:

Intron Rank:
10
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
76793853 - 76795255
Intron Length:
1403

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CCT|GTAAGTAGA
5'SS Class:
major
3'SS Sequence:
GGTCTCTCCCCAG|T
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TATTTAC
U12 Branch Point Sequence:
CTCTCCTCCACC
Flanking Amino Acid:
CTDPSSQLNAFSDVKVPMLP
Intron Amino Acid Position:
462

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
75.1
0.59
1.1
71.3
40.3
Major BPS
78.8
0.71
0.9
69.7
37.1
Major PPT
71.3
0.48
0.9
61.9
39.9
Minor 5ss
38
-1.4
2.8
52.3
44.3
Minor BPS
53.5
0.09
2.1
66.26
45.6

Associated Gene:

Gene:
GRHL1
Ensembl Gene ID:
ENSAPLG00000008667
Chromosome:
3

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000047531
76789159 - 76815435
26277
ENSAPLT00000025469
76789189 - 76813639
24451
ENSAPLT00000009048
76789189 - 76814943
25755