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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_3_76809249_76810656_R

Intron Information:

Intron Rank:
3
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
76809249 - 76810656
Intron Length:
1408

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTATTAGCT
5'SS Class:
major
3'SS Sequence:
TTGCCTTTTGAAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TATTTAC
U12 Branch Point Sequence:
GTTTATTTACTT
Flanking Amino Acid:
VEHPDQDHSKRNNIPNVTEQ
Intron Amino Acid Position:
102

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
73.2
0.55
1
67.1
36.3
Major BPS
78.8
0.71
0.9
69.7
37.1
Major PPT
73.7
0.53
1
75
33.6
Minor 5ss
39.2
-1.2
3.4
57.4
46.8
Minor BPS
58.1
0.33
1.8
77.31
39.6

Associated Gene:

Gene:
GRHL1
Ensembl Gene ID:
ENSAPLG00000008667
Chromosome:
3

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000009048
76789189 - 76814943
25755
ENSAPLT00000047531
76789159 - 76815435
26277
ENSAPLT00000025469
76789189 - 76813639
24451