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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_3_7681049_7681931_R

Intron Information:

Intron Rank:
7
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
7681049 - 7681931
Intron Length:
883

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTAAGGCTT
5'SS Class:
strong_major
3'SS Sequence:
ACCCTTGCTGCAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
GTTTAAC
U12 Branch Point Sequence:
CTTGGTTTAACT
Flanking Amino Acid:
MLIYHKRCHTGERPFMCETC
Intron Amino Acid Position:
1368

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
90.9
0.96
0.8
82.5
37
Major BPS
71.9
0.54
1.2
75.6
36.6
Major PPT
71.7
0.49
0.9
65
35.7
Minor 5ss
36.7
-1.5
3.5
55.8
48.4
Minor BPS
61.3
0.43
1.9
78.9
44

Associated Gene:

Gene:
GZF1
Ensembl Gene ID:
ENSAPLG00000027566
Chromosome:
3

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000033890
7677753 - 7697299
19547