About Basic Search Advanced Search Downloads

© 2019-2022 Kanadia Lab,
PNB, Uconn

Construction by: Audrey Weber

Contact Us

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_3_76810728_76812825_R

Intron Information:

Intron Rank:
2
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
76810728 - 76812825
Intron Length:
2098

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTAGATTGG
5'SS Class:
major
3'SS Sequence:
TTGTGTTTCCCAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
AATGCAA
U12 Branch Point Sequence:
AATGCAATGACA
Flanking Amino Acid:
ALGLLYDYYKVPRERRSSTA
Intron Amino Acid Position:
79

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
74.7
0.58
1.1
63
44.1
Major BPS
49.7
-0
1.3
61.4
36.2
Major PPT
80.3
0.68
0.9
72.8
42.2
Minor 5ss
37.6
-1.4
3.2
49.2
47.1
Minor BPS
46.6
-0.2
2
60.06
39.1

Associated Gene:

Gene:
GRHL1
Ensembl Gene ID:
ENSAPLG00000008667
Chromosome:
3

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000047531
76789159 - 76815435
26277
ENSAPLT00000025469
76789189 - 76813639
24451
ENSAPLT00000009048
76789189 - 76814943
25755