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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_3_7681855_7681931_R

Intron Information:

Intron Rank:
7
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
7681855 - 7681931
Intron Length:
77

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTAAGGCTT
5'SS Class:
strong_major
3'SS Sequence:
ATTTTCATTCCAG|A
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTTTCAT
U12 Branch Point Sequence:
TGATTTTCATTC
Flanking Amino Acid:
MLIYHKRCHTESHVLLVLMQ
Intron Amino Acid Position:
1368

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
90.9
0.96
0.8
82.5
37
Major BPS
100
1.24
0.5
100
0
Major PPT
83.7
0.76
0.8
75
39.1
Minor 5ss
36.7
-1.5
3.5
55.8
48.4
Minor BPS
46.7
-0.2
1.7
55.48
37.1

Associated Gene:

Gene:
GZF1
Ensembl Gene ID:
ENSAPLG00000027566
Chromosome:
3

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000038645
7681512 - 7697298
15787