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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_3_76830436_76833166_R

Intron Information:

Intron Rank:
11
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
76830436 - 76833166
Intron Length:
2731

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTACGGAAA
5'SS Class:
strong_major
3'SS Sequence:
ATGTTTTATTCAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
GTTTTAT
U12 Branch Point Sequence:
TTCTTCACAACC
Flanking Amino Acid:
AAERNKNNKEGGPYFEFKEW
Intron Amino Acid Position:
388

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
81.9
0.75
1
75.1
36.6
Major BPS
78.7
0.71
1.2
71.7
44.6
Major PPT
79.7
0.67
0.9
78.2
39.8
Minor 5ss
30.5
-2.2
3.3
39.1
46.3
Minor BPS
56
0.17
1.8
71.2
40

Associated Gene:

Gene:
TAF1B
Ensembl Gene ID:
ENSAPLG00000008537
Chromosome:
3

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000008900
76823712 - 76871430
47719