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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_3_76833699_76835842_R

Intron Information:

Intron Rank:
9
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
76833699 - 76835842
Intron Length:
2144

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CTG|GTAAATATT
5'SS Class:
strong_major
3'SS Sequence:
TTGTATTAATTAG|A
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTTTTAT
U12 Branch Point Sequence:
TTTGTATTAATT
Flanking Amino Acid:
MKYLMEVNLPDELHNWTCRV
Intron Amino Acid Position:
313

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
82.7
0.77
0.9
86
29.7
Major BPS
96.5
1.15
0.6
86
34.2
Major PPT
67.3
0.39
1
68
42.3
Minor 5ss
41.2
-1
3
56.7
42
Minor BPS
66.3
0.59
1.7
84.39
36.6

Associated Gene:

Gene:
TAF1B
Ensembl Gene ID:
ENSAPLG00000008537
Chromosome:
3

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000008900
76823712 - 76871430
47719