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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_3_76835991_76856566_R

Intron Information:

Intron Rank:
8
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
76835991 - 76856566
Intron Length:
20576

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GAG|GTAATTTTT
5'SS Class:
strong_major
3'SS Sequence:
CCCTGTCTTTCAG|T
3'SS Class:
major_PPT
U2 Branch Point Sequence:
AATGCAT
U12 Branch Point Sequence:
AAATGCATAACC
Flanking Amino Acid:
GLDLRIFCVESWPVYEEVYS
Intron Amino Acid Position:
264

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
88.9
0.92
0.9
89.8
23.7
Major BPS
58.4
0.21
1.3
69.4
37.7
Major PPT
79.3
0.66
0.8
75.9
32.7
Minor 5ss
46.2
-0.4
2.8
67.4
43.6
Minor BPS
50.9
0.01
2
64.34
40.4

Associated Gene:

Gene:
TAF1B
Ensembl Gene ID:
ENSAPLG00000008537
Chromosome:
3

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000008900
76823712 - 76871430
47719