Gene Search

About Basic Search Advanced Search Downloads

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_3_76856667_76863230_R

Intron Information:

Intron Rank:

Intron Class:

major

Intron Phase:

Intron Coordinates:

76856667 - 76863230

Intron Length:

6564

Sequence Information:

Terminal Dinucleotides:

GT-AG

5'SS Sequence:

AAG|GTATGAACA

5'SS Class:

strong_major

3'SS Sequence:

TTTTTTTATGCAG|G

3'SS Class:

strong_PPT

U2 Branch Point Sequence:

TTTTTAT

U12 Branch Point Sequence:

ATTATTTTGATT

Flanking Amino Acid:

REPMTLSDLLRFVVEGHIPY

Intron Amino Acid Position:

230

Site Scores:

Score

LOD

LOD StDev

Match

Match StDev

Major 5ss

84.1

0.8

0.9

76.1

32.7

Major BPS

96.5

1.15

0.6

34.2

Major PPT

91.8

0.94

0.7

89.1

26.6

Minor 5ss

39.8

-1.1

2.8

Minor BPS

63.6

0.51

1.2

76.93

33.5

Associated Gene:

Gene:

TAF1B

Ensembl Gene ID:

ENSAPLG00000008537

Chromosome:

Associated Transcripts:

Ensembl Transcript ID

Transcript Coordinates

Transcript Length

ENSAPLT00000008900

76823712 - 76871430

47719