About Basic Search Advanced Search Downloads

© 2019-2022 Kanadia Lab,
PNB, Uconn

Construction by: Audrey Weber

Contact Us

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_3_76863388_76866899_R

Intron Information:

Intron Rank:
6
Intron Class:
major-like
Intron Phase:
1
Intron Coordinates:
76863388 - 76866899
Intron Length:
3512

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTAGGAGCA
5'SS Class:
strong_major
3'SS Sequence:
ACATAAACCAAAG|A
3'SS Class:
degenerate_major
U2 Branch Point Sequence:
TTTTAAA
U12 Branch Point Sequence:
TTTGTTTTAAAC
Flanking Amino Acid:
SFASSSGKVSECTSVCSGSV
Intron Amino Acid Position:
178

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
80.7
0.72
1
68.7
36.4
Major BPS
90.4
1
0.7
90.2
19.3
Major PPT
48.3
-0.1
1.1
42.7
35.5
Minor 5ss
29.3
-2.4
3.5
39
46.3
Minor BPS
65.8
0.48
1.5
74.65
36.2

Associated Gene:

Gene:
TAF1B
Ensembl Gene ID:
ENSAPLG00000008537
Chromosome:
3

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000008900
76823712 - 76871430
47719