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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_3_76868074_76869938_R

Intron Information:

Intron Rank:
3
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
76868074 - 76869938
Intron Length:
1865

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GCG|GTATGTATG
5'SS Class:
strong_major
3'SS Sequence:
TTTTTTAAATTAG|A
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTTTAAA
U12 Branch Point Sequence:
TTTTTTTAAATT
Flanking Amino Acid:
SKGSRNRGKSEEGWEWYVCE
Intron Amino Acid Position:
69

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
80.1
0.71
1
74.8
41.3
Major BPS
90.4
1
0.7
90.2
19.3
Major PPT
74.8
0.56
0.9
76.6
36.5
Minor 5ss
45.9
-0.4
2.5
60.4
44.2
Minor BPS
69.6
0.69
1.6
86.64
33.8

Associated Gene:

Gene:
TAF1B
Ensembl Gene ID:
ENSAPLG00000008537
Chromosome:
3

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000008900
76823712 - 76871430
47719