About Basic Search Advanced Search Downloads

© 2019-2022 Kanadia Lab,
PNB, Uconn

Construction by: Audrey Weber

Contact Us

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_3_76870027_76870529_R

Intron Information:

Intron Rank:
2
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
76870027 - 76870529
Intron Length:
503

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GAG|GTAAAAACT
5'SS Class:
strong_major
3'SS Sequence:
TACTGTTTTGCAG|A
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TGCTAAC
U12 Branch Point Sequence:
TTCTTGCTAACA
Flanking Amino Acid:
YCRTCHNVTERTRDVVNTEV
Intron Amino Acid Position:
40

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
83.7
0.79
0.9
80.5
31.7
Major BPS
69.4
0.48
1.1
69.6
35.5
Major PPT
82.2
0.72
0.9
76.5
37.2
Minor 5ss
35.5
-1.7
3.1
50.2
45.8
Minor BPS
49.9
-0
2.3
71.21
41.3

Associated Gene:

Gene:
TAF1B
Ensembl Gene ID:
ENSAPLG00000008537
Chromosome:
3

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000008900
76823712 - 76871430
47719