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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_3_76915448_76916569_R

Intron Information:

Intron Rank:
145086
Intron Class:
major
Intron Phase:
Intron Coordinates:
76915448 - 76916569
Intron Length:
1122

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTGGGAGGC
5'SS Class:
major
3'SS Sequence:
GTTTGTTTTATAG|A
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TAATTAC
U12 Branch Point Sequence:
ACTCCTGTAATT
Flanking Amino Acid:
Intron Amino Acid Position:

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
75.1
0.59
1
60.3
39.3
Major BPS
67
0.42
1.1
58
38.5
Major PPT
81.9
0.72
0.8
76.5
37.7
Minor 5ss
23.9
-3
3.3
32.2
42.7
Minor BPS
52.5
0.16
2
71.15
40.6

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000025473
Chromosome:
3

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000044901
76910348 - 76916578
6231