About Basic Search Advanced Search Downloads

© 2019-2022 Kanadia Lab,
PNB, Uconn

Construction by: Audrey Weber

Contact Us

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_3_76969399_76984575_F

Intron Information:

Intron Rank:
2
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
76969399 - 76984575
Intron Length:
15177

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CTG|GTGAGTGGG
5'SS Class:
strong_major
3'SS Sequence:
TTTTATTCTTTAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTTTTAT
U12 Branch Point Sequence:
TTTCTTTTTATT
Flanking Amino Acid:
ELRSICTTVLELLDKYLIAN
Intron Amino Acid Position:
84

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
81.1
0.73
0.9
64.9
41.1
Major BPS
96.5
1.15
0.6
86
34.2
Major PPT
86.7
0.82
0.7
85.8
28.4
Minor 5ss
26.8
-2.7
3
28.2
38.6
Minor BPS
61.5
0.44
1.6
80.48
35.3

Associated Gene:

Gene:
YWHAQ
Ensembl Gene ID:
ENSAPLG00000023697
Chromosome:
3

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000019541
76969104 - 76988900
19797