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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_3_76984700_76987162_F

Intron Information:

Intron Rank:
3
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
76984700 - 76987162
Intron Length:
2463

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAC|GTAAGTACC
5'SS Class:
major
3'SS Sequence:
CTCCTTTTCACAG|A
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TATTGAA
U12 Branch Point Sequence:
TAATATTGAAAT
Flanking Amino Acid:
AEVACGDDRKQTIENSQGAY
Intron Amino Acid Position:
125

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
79.8
0.7
1.3
78.8
35.5
Major BPS
79.4
0.73
0.9
69.6
37.5
Major PPT
83
0.74
0.7
78.4
27.3
Minor 5ss
38.4
-1.3
2.7
46.6
34.4
Minor BPS
50.7
0.1
1.7
69.85
40.1

Associated Gene:

Gene:
YWHAQ
Ensembl Gene ID:
ENSAPLG00000023697
Chromosome:
3

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000019541
76969104 - 76988900
19797