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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_3_76987327_76987682_F

Intron Information:

Intron Rank:
4
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
76987327 - 76987682
Intron Length:
356

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
ACA|GTAAGTCGC
5'SS Class:
major
3'SS Sequence:
TTAATTGTTCCAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TCTTAAT
U12 Branch Point Sequence:
TTGCTCTTAATT
Flanking Amino Acid:
PELACTLAKTAFDEAIAELD
Intron Amino Acid Position:
180

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
73.6
0.56
1.1
61.2
43.9
Major BPS
87
0.92
0.9
86.2
29.1
Major PPT
78
0.63
1
69.5
45.7
Minor 5ss
36.8
-1.5
3
50.3
40
Minor BPS
75.8
0.89
1.1
84.85
35.9

Associated Gene:

Gene:
YWHAQ
Ensembl Gene ID:
ENSAPLG00000023697
Chromosome:
3

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000019541
76969104 - 76988900
19797