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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_3_76987779_76988840_F

Intron Information:

Intron Rank:
5
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
76987779 - 76988840
Intron Length:
1062

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
ACA|GTGAGTTGA
5'SS Class:
major
3'SS Sequence:
CTTTTCTTTCTAG|T
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TCCAAAA
U12 Branch Point Sequence:
CTCCCTCCAAAA
Flanking Amino Acid:
IMQLLRDNLTLWTSDSAGEE
Intron Amino Acid Position:
212

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
71.8
0.51
1
65.2
37.3
Major BPS
55.5
0.14
1
61.5
32.5
Major PPT
87.5
0.84
0.6
81.1
31
Minor 5ss
36.3
-1.6
2.9
45.7
43.5
Minor BPS
42.6
-0.5
1.9
50.93
40.4

Associated Gene:

Gene:
YWHAQ
Ensembl Gene ID:
ENSAPLG00000023697
Chromosome:
3

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000019541
76969104 - 76988900
19797