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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_3_77012030_77019802_F

Intron Information:

Intron Rank:
1
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
77012030 - 77019802
Intron Length:
7773

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
ACG|GTAAGGGGC
5'SS Class:
major
3'SS Sequence:
GTTTTTTTTTCAG|C
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TCTTGAA
U12 Branch Point Sequence:
GGATCTTGAAAC
Flanking Amino Acid:
LGRPPQRQRYASVESMLSDY
Intron Amino Acid Position:
37

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
78.7
0.68
1
64.8
41.3
Major BPS
74.6
0.61
1
65.6
41.4
Major PPT
93.5
0.98
0.7
92.3
26.6
Minor 5ss
30.1
-2.3
3.5
41.6
45.3
Minor BPS
52.8
0.07
1.5
59.56
38.5

Associated Gene:

Gene:
ADAM17
Ensembl Gene ID:
ENSAPLG00000007716
Chromosome:
3

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000008064
77011921 - 77038379
26459