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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_3_77022569_77024552_F

Intron Information:

Intron Rank:
4
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
77022569 - 77024552
Intron Length:
1984

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GAG|GTATGCCTT
5'SS Class:
strong_major
3'SS Sequence:
CTTGTGCTGTCAG|C
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TCCTAAC
U12 Branch Point Sequence:
ACTACCTGCATT
Flanking Amino Acid:
NTDGEEYNIEPLWRFIDNEQ
Intron Amino Acid Position:
156

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
82.3
0.76
1
74.4
41.9
Major BPS
72
0.55
1
71.8
31.4
Major PPT
70.9
0.47
1.1
69.2
41.8
Minor 5ss
49.9
-0
2.8
73.5
43.2
Minor BPS
48.8
-0
1.9
67.89
43.1

Associated Gene:

Gene:
ADAM17
Ensembl Gene ID:
ENSAPLG00000007716
Chromosome:
3

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000008064
77011921 - 77038379
26459