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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_3_77028211_77028728_F

Intron Information:

Intron Rank:
8
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
77028211 - 77028728
Intron Length:
518

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GAG|GTAGGTAGT
5'SS Class:
strong_major
3'SS Sequence:
TTTTCCTTTAAAG|C
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TGTTCAT
U12 Branch Point Sequence:
TTTCCTTTAAAG
Flanking Amino Acid:
DAWDVKMLLEQFSFDIAEKA
Intron Amino Acid Position:
324

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
87.4
0.88
0.9
81.8
38.5
Major BPS
84.8
0.86
1
85.7
34.9
Major PPT
81.3
0.71
0.9
82.5
26.6
Minor 5ss
36.1
-1.6
3.1
51.1
45.4
Minor BPS
70.8
0.52
1.4
74.3
37.5

Associated Gene:

Gene:
ADAM17
Ensembl Gene ID:
ENSAPLG00000007716
Chromosome:
3

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000008064
77011921 - 77038379
26459