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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_3_77028874_77029437_F

Intron Information:

Intron Rank:
9
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
77028874 - 77029437
Intron Length:
564

Sequence Information:

Terminal Dinucleotides:
GC-AG
5'SS Sequence:
AAG|GCAAGACTT
5'SS Class:
strong_major
3'SS Sequence:
CTCACCTCTCTAG|C
3'SS Class:
major_PPT
U2 Branch Point Sequence:
ATTTGAT
U12 Branch Point Sequence:
TCTTTCTCACCT
Flanking Amino Acid:
PNSHGGICPKAYYSQIAKKD
Intron Amino Acid Position:
372

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
93.1
1.02
0.9
83.8
34.2
Major BPS
87.6
0.93
0.8
77.4
37.3
Major PPT
70.8
0.47
0.8
62
34.7
Minor 5ss
27.6
-2.6
4.2
47.4
48
Minor BPS
59.7
0.38
1.9
79.4
43

Associated Gene:

Gene:
ADAM17
Ensembl Gene ID:
ENSAPLG00000007716
Chromosome:
3

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000008064
77011921 - 77038379
26459