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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_3_77033610_77034228_F

Intron Information:

Intron Rank:
14
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
77033610 - 77034228
Intron Length:
619

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
ACG|GTGGGTGGC
5'SS Class:
major
3'SS Sequence:
GGGTTTCTTACAG|A
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TGATGAT
U12 Branch Point Sequence:
GGTTTCTTACAG
Flanking Amino Acid:
EKNLRSCACNETDNSCKVCC
Intron Amino Acid Position:
599

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
70.8
0.49
1.1
58.1
41
Major BPS
69.5
0.48
1.2
59.7
46.7
Major PPT
76.1
0.59
1
68.8
42.1
Minor 5ss
26.7
-2.7
3.3
34.2
42.1
Minor BPS
51.4
-0
1.8
57.86
43.4

Associated Gene:

Gene:
ADAM17
Ensembl Gene ID:
ENSAPLG00000007716
Chromosome:
3

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000008064
77011921 - 77038379
26459