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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_3_77035056_77035750_F

Intron Information:

Intron Rank:
16
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
77035056 - 77035750
Intron Length:
695

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
TTG|GTGAGATGT
5'SS Class:
major
3'SS Sequence:
ACTGATTTCCCAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
ATTTGAA
U12 Branch Point Sequence:
TGGATTTGAACT
Flanking Amino Acid:
FIDQLSINTFGKFLADNIVG
Intron Amino Acid Position:
669

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
79.4
0.69
0.9
70.3
36.4
Major BPS
78.4
0.71
0.9
69.4
37.7
Major PPT
71.2
0.48
1
61.6
43.7
Minor 5ss
34.4
-1.8
3.2
44.3
45.4
Minor BPS
55.7
0.26
1.5
69.88
41

Associated Gene:

Gene:
ADAM17
Ensembl Gene ID:
ENSAPLG00000007716
Chromosome:
3

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000008064
77011921 - 77038379
26459