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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_3_77035840_77036390_F

Intron Information:

Intron Rank:
17
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
77035840 - 77036390
Intron Length:
551

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GTG|GTGAGTGAG
5'SS Class:
strong_major
3'SS Sequence:
TATTTCCCAACAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TGTTTAT
U12 Branch Point Sequence:
TATTTCCCAACA
Flanking Amino Acid:
IPLSILVHCVDKKLDKQYEE
Intron Amino Acid Position:
699

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
82.7
0.77
0.9
70.2
35.9
Major BPS
81.3
0.78
1.1
71.7
44.6
Major PPT
75.9
0.58
0.9
71.1
34.3
Minor 5ss
26.7
-2.7
3
27.9
37.8
Minor BPS
57.4
0.23
1.9
73.65
37.5

Associated Gene:

Gene:
ADAM17
Ensembl Gene ID:
ENSAPLG00000007716
Chromosome:
3

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000008064
77011921 - 77038379
26459