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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_3_77036448_77037593_F

Intron Information:

Intron Rank:
18
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
77036448 - 77037593
Intron Length:
1146

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AGT|GTAAGTCGC
5'SS Class:
major
3'SS Sequence:
CTCCCCCTTGCAG|A
3'SS Class:
major_PPT
U2 Branch Point Sequence:
AATGAAT
U12 Branch Point Sequence:
GAATCCTGAGCT
Flanking Amino Acid:
ENTKSLFCPSNVEMLSSLDS
Intron Amino Acid Position:
718

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
71.5
0.51
1.2
60
44.9
Major BPS
58
0.2
1.3
67.7
36.5
Major PPT
79
0.65
0.7
72.5
25.6
Minor 5ss
36.6
-1.5
3
45.5
42.5
Minor BPS
57.4
0.31
1.7
72.69
43.1

Associated Gene:

Gene:
ADAM17
Ensembl Gene ID:
ENSAPLG00000007716
Chromosome:
3

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000008064
77011921 - 77038379
26459