About Basic Search Advanced Search Downloads

© 2019-2022 Kanadia Lab,
PNB, Uconn

Construction by: Audrey Weber

Contact Us

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_3_77040613_77040685_R

Intron Information:

Intron Rank:
5
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
77040613 - 77040685
Intron Length:
73

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTACGGCAT
5'SS Class:
strong_major
3'SS Sequence:
ACCTCCCCTGTAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTTTTAA
U12 Branch Point Sequence:
AGGTTTTTAACC
Flanking Amino Acid:
DLWTLMQKNQDFSAYLSDGL
Intron Amino Acid Position:
189

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
80.1
0.71
1
69.7
42.4
Major BPS
87.3
0.93
0.8
78
36.5
Major PPT
69.3
0.43
0.8
62.7
27.7
Minor 5ss
31.3
-2.1
3.6
46.8
48.5
Minor BPS
68.6
0.56
1.2
68.77
36.8

Associated Gene:

Gene:
IAH1
Ensembl Gene ID:
ENSAPLG00000007422
Chromosome:
3

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000007710
77040375 - 77044144
3770