Gene Search

About Basic Search Advanced Search Downloads

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_3_77040805_77041321_R

Intron Information:

Intron Rank:

Intron Class:

major

Intron Phase:

Intron Coordinates:

77040805 - 77041321

Intron Length:

517

Sequence Information:

Terminal Dinucleotides:

GT-AG

5'SS Sequence:

AAG|GTAAATGCG

5'SS Class:

strong_major

3'SS Sequence:

TTGTGCCTGGCAG|G

3'SS Class:

major_PPT

U2 Branch Point Sequence:

TGGAGAT

U12 Branch Point Sequence:

GATTGCTGAGCC

Flanking Amino Acid:

SAWEKECLAKGDKLNRRNAT

Intron Amino Acid Position:

149

Site Scores:

Score

LOD

LOD StDev

Match

Match StDev

Major 5ss

84.6

0.82

0.9

72.1

37.7

Major BPS

49.5

-0

1.3

46.4

Major PPT

70.4

0.46

1.1

40.8

Minor 5ss

32.4

-2

3.2

41.3

45.2

Minor BPS

47.6

-0.2

2.1

61.71

Associated Gene:

Gene:

IAH1

Ensembl Gene ID:

ENSAPLG00000007422

Chromosome:

Associated Transcripts:

Ensembl Transcript ID

Transcript Coordinates

Transcript Length

ENSAPLT00000007710

77040375 - 77044144

3770