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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_3_77041484_77042311_R

Intron Information:

Intron Rank:
3
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
77041484 - 77042311
Intron Length:
828

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTACGGTAA
5'SS Class:
strong_major
3'SS Sequence:
GCACCCTCAACAG|A
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTTACAT
U12 Branch Point Sequence:
TTTTACATCACT
Flanking Amino Acid:
FFGANDSALKDLNPKQHVPL
Intron Amino Acid Position:
95

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
81.1
0.73
1
72.1
35.8
Major BPS
82.7
0.81
0.9
89.3
26.1
Major PPT
61.1
0.25
1
54.5
35
Minor 5ss
35
-1.7
3.4
46.3
49
Minor BPS
57
0.3
2.2
86.2
39.4

Associated Gene:

Gene:
IAH1
Ensembl Gene ID:
ENSAPLG00000007422
Chromosome:
3

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000007710
77040375 - 77044144
3770