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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_3_77046095_77047268_R

Intron Information:

Intron Rank:
10
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
77046095 - 77047268
Intron Length:
1174

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CGG|GTATGAACA
5'SS Class:
major
3'SS Sequence:
TTTTTATTCCCAG|A
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTTTTAT
U12 Branch Point Sequence:
ATTTTCCTAACT
Flanking Amino Acid:
KTANVSLDTRTVDCEPGSED
Intron Amino Acid Position:
375

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
74.4
0.58
1
67
38.3
Major BPS
96.5
1.15
0.6
86
34.2
Major PPT
88.1
0.86
0.7
81.4
35.2
Minor 5ss
39.4
-1.2
2.7
41.8
44.5
Minor BPS
74.1
0.83
1.6
91.01
31.7

Associated Gene:

Gene:
CPSF3
Ensembl Gene ID:
ENSAPLG00000006941
Chromosome:
3

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000007257
77045993 - 77056823
10831