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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_3_77047366_77047957_R

Intron Information:

Intron Rank:
9
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
77047366 - 77047957
Intron Length:
592

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
TCA|GTAAGTTCA
5'SS Class:
major
3'SS Sequence:
GCCTTTGTTTTAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
GTCTTAC
U12 Branch Point Sequence:
CATGTCTTACGT
Flanking Amino Acid:
LYSKRMEIMLQDMFGEDCVS
Intron Amino Acid Position:
342

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
76.9
0.63
1
71.7
34.4
Major BPS
63.8
0.34
1.2
57.4
41.4
Major PPT
74.6
0.55
0.9
72.5
37.7
Minor 5ss
42.7
-0.8
2.7
56.3
41.9
Minor BPS
47.3
-0.1
2
63.69
46.9

Associated Gene:

Gene:
CPSF3
Ensembl Gene ID:
ENSAPLG00000006941
Chromosome:
3

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000007257
77045993 - 77056823
10831