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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_3_77048028_77049944_R

Intron Information:

Intron Rank:
8
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
77048028 - 77049944
Intron Length:
1917

Sequence Information:

Terminal Dinucleotides:
GC-AG
5'SS Sequence:
GTA|GCAAGTTTA
5'SS Class:
major
3'SS Sequence:
TTTTTCTTTTCAG|C
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
AGCAAAT
U12 Branch Point Sequence:
AGTAAGATGACT
Flanking Amino Acid:
VQSNPKIQKGTAVQKISKKV
Intron Amino Acid Position:
319

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
71
0.5
1.2
70.5
36.3
Major BPS
53.3
0.08
1.1
59
36
Major PPT
97.2
1.06
0.5
96.4
12.2
Minor 5ss
35.3
-1.7
4
50.7
41.2
Minor BPS
40.9
-0.6
2.3
61.41
41.7

Associated Gene:

Gene:
CPSF3
Ensembl Gene ID:
ENSAPLG00000006941
Chromosome:
3

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000007257
77045993 - 77056823
10831