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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_3_77050036_77050545_R

Intron Information:

Intron Rank:
7
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
77050036 - 77050545
Intron Length:
510

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GAG|GTAGGCACT
5'SS Class:
strong_major
3'SS Sequence:
TTTTATTTTCCAG|T
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTTTTAT
U12 Branch Point Sequence:
TTTTTTTTATTT
Flanking Amino Acid:
IQEPGMVVLEWVANPANDMY
Intron Amino Acid Position:
289

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
81.4
0.74
1
75.3
40.8
Major BPS
96.5
1.15
0.6
86
34.2
Major PPT
92
0.95
0.7
84.8
35.4
Minor 5ss
40.6
-1
3.2
58.1
46.3
Minor BPS
70.5
0.72
1.5
86.8
33.5

Associated Gene:

Gene:
CPSF3
Ensembl Gene ID:
ENSAPLG00000006941
Chromosome:
3

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000007257
77045993 - 77056823
10831