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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_3_77050641_77051738_R

Intron Information:

Intron Rank:
6
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
77050641 - 77051738
Intron Length:
1098

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CTG|GTGCGTATT
5'SS Class:
major
3'SS Sequence:
TGCTACTTCTTAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
ATTTTAT
U12 Branch Point Sequence:
ATAATTTTATCC
Flanking Amino Acid:
LLYYQLQKLTGDVEEIEIQQ
Intron Amino Acid Position:
257

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
78.1
0.66
1
79.8
34.9
Major BPS
87.7
0.94
0.8
77.7
36.7
Major PPT
71.8
0.49
0.8
69.5
36.5
Minor 5ss
35.3
-1.7
3.2
47.5
43.4
Minor BPS
52.4
0.05
1.6
61.81
37.5

Associated Gene:

Gene:
CPSF3
Ensembl Gene ID:
ENSAPLG00000006941
Chromosome:
3

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000007257
77045993 - 77056823
10831