Gene Search

About Basic Search Advanced Search Downloads

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_3_77054750_77055361_R

Intron Information:

Intron Rank:

Intron Class:

major

Intron Phase:

Intron Coordinates:

77054750 - 77055361

Intron Length:

612

Sequence Information:

Terminal Dinucleotides:

GT-AG

5'SS Sequence:

GTG|GTTAGTATA

5'SS Class:

major

3'SS Sequence:

GTCTTTCTTACAG|A

3'SS Class:

strong_PPT

U2 Branch Point Sequence:

ATGTAAA

U12 Branch Point Sequence:

TCTTTCTTACAG

Flanking Amino Acid:

FIRALKPPHVILVHGEQNEM

Intron Amino Acid Position:

137

Site Scores:

Score

LOD

LOD StDev

Match

Match StDev

Major 5ss

78.8

0.68

1.1

80.9

32.7

Major BPS

66.4

0.41

1.1

67.7

36.5

Major PPT

85.7

0.8

79.8

32.3

Minor 5ss

35.8

-1.6

2.6

41.2

Minor BPS

56.9

0.08

1.8

63.72

44.3

Associated Gene:

Gene:

CPSF3

Ensembl Gene ID:

ENSAPLG00000006941

Chromosome:

Associated Transcripts:

Ensembl Transcript ID

Transcript Coordinates

Transcript Length

ENSAPLT00000007257

77045993 - 77056823

10831