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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_3_77055509_77056223_R

Intron Information:

Intron Rank:
2
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
77055509 - 77056223
Intron Length:
715

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTGAGTTGT
5'SS Class:
strong_major
3'SS Sequence:
TTTTTTTTTCTAG|C
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTTTAAT
U12 Branch Point Sequence:
TTTTATTTAAAG
Flanking Amino Acid:
GYCVEGTLAKHIMSEPEEIT
Intron Amino Acid Position:
88

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
92.2
0.99
0.7
83.9
30.3
Major BPS
99.5
1.23
0.5
98.2
4.2
Major PPT
94
0.99
0.5
88.9
28.2
Minor 5ss
36.5
-1.5
2.9
49.7
46.6
Minor BPS
66.5
0.38
1.7
73.73
38.3

Associated Gene:

Gene:
CPSF3
Ensembl Gene ID:
ENSAPLG00000006941
Chromosome:
3

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000007257
77045993 - 77056823
10831