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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_3_77056383_77056721_R

Intron Information:

Intron Rank:
1
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
77056383 - 77056721
Intron Length:
339

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTAAGGTTG
5'SS Class:
strong_major
3'SS Sequence:
GTTTTCCACTTAG|A
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTTCCAC
U12 Branch Point Sequence:
ATTATGGTAACT
Flanking Amino Acid:
FVFKHISNLKSMDHFDDIGP
Intron Amino Acid Position:
35

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
90.4
0.95
0.8
79.5
36.8
Major BPS
67.4
0.43
1.3
78.4
35.2
Major PPT
72.3
0.5
0.9
71
34.9
Minor 5ss
40.3
-1.1
3.3
55
49.2
Minor BPS
46.7
-0.1
2.6
74.39
42.6

Associated Gene:

Gene:
CPSF3
Ensembl Gene ID:
ENSAPLG00000006941
Chromosome:
3

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000007257
77045993 - 77056823
10831