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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_3_77065731_77066534_F

Intron Information:

Intron Rank:
2
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
77065731 - 77066534
Intron Length:
804

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTAAGCTGA
5'SS Class:
strong_major
3'SS Sequence:
ATTTTCTTCTTAG|T
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTCTGAT
U12 Branch Point Sequence:
TTTCTGATGACA
Flanking Amino Acid:
QSSEISTKSKSVDSSLGGLS
Intron Amino Acid Position:
25

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
88.8
0.91
0.9
75
38.1
Major BPS
91.3
1.03
0.7
79.6
35.6
Major PPT
82.5
0.73
0.7
81.8
29.4
Minor 5ss
43.2
-0.7
2.9
56.2
47.9
Minor BPS
47
-0.2
2.3
68.5
37.6

Associated Gene:

Gene:
ITGB1BP1
Ensembl Gene ID:
ENSAPLG00000006929
Chromosome:
3

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000007191
77064448 - 77071033
6586