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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_3_77066614_77067333_F

Intron Information:

Intron Rank:
3
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
77066614 - 77067333
Intron Length:
720

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTATGTAAT
5'SS Class:
strong_major
3'SS Sequence:
TATTTTGTTGCAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
GTTTTAT
U12 Branch Point Sequence:
GCTGTTTTATTT
Flanking Amino Acid:
SLDTDSTKSSGQSNSNSDTC
Intron Amino Acid Position:
51

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
90.7
0.96
0.8
88.7
25.1
Major BPS
78.7
0.71
1.2
71.7
44.6
Major PPT
85.8
0.81
0.9
80.9
36.4
Minor 5ss
43.5
-0.7
2.6
59.2
45.4
Minor BPS
49.1
0.01
1.7
63.03
42.4

Associated Gene:

Gene:
ITGB1BP1
Ensembl Gene ID:
ENSAPLG00000006929
Chromosome:
3

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000007191
77064448 - 77071033
6586