About Basic Search Advanced Search Downloads

© 2019-2022 Kanadia Lab,
PNB, Uconn

Construction by: Audrey Weber

Contact Us

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_3_77067471_77068396_F

Intron Information:

Intron Rank:
4
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
77067471 - 77068396
Intron Length:
926

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTAAGTACA
5'SS Class:
strong_major
3'SS Sequence:
TTTCCCTCCAAAG|C
3'SS Class:
major_PPT
U2 Branch Point Sequence:
CACTAAA
U12 Branch Point Sequence:
TTTCCCTCCAAA
Flanking Amino Acid:
DLINYIDVAQQDGKLPFVPG
Intron Amino Acid Position:
97

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
97.1
1.11
0.7
89.8
22.5
Major BPS
65.2
0.38
0.9
65.5
27.9
Major PPT
70.3
0.46
1
71.1
27.4
Minor 5ss
36
-1.6
2.6
43.5
43.6
Minor BPS
49.7
-0
2.1
70.84
40.8

Associated Gene:

Gene:
ITGB1BP1
Ensembl Gene ID:
ENSAPLG00000006929
Chromosome:
3

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000007191
77064448 - 77071033
6586