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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_3_77068490_77070277_F

Intron Information:

Intron Rank:
5
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
77068490 - 77070277
Intron Length:
1788

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
TAT|GTAAGTGAT
5'SS Class:
strong_major
3'SS Sequence:
TGAACGTTTTCAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
CTCTCAT
U12 Branch Point Sequence:
ATTTCCTGAACG
Flanking Amino Acid:
GIKVSTSDQYDVLHRHALYL
Intron Amino Acid Position:
128

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
85.3
0.83
1
83.5
27.9
Major BPS
82.6
0.81
0.9
83.3
27.7
Major PPT
70.5
0.46
1
65.7
45
Minor 5ss
36.8
-1.5
3.4
53.7
43.8
Minor BPS
76.8
0.7
1.4
79.25
36.6

Associated Gene:

Gene:
ITGB1BP1
Ensembl Gene ID:
ENSAPLG00000006929
Chromosome:
3

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000007191
77064448 - 77071033
6586