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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_3_77079498_77080403_R

Intron Information:

Intron Rank:
23
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
77079498 - 77080403
Intron Length:
906

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAA|GTATGTTTC
5'SS Class:
major
3'SS Sequence:
CTTTTTTCCATAG|A
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTTTCAT
U12 Branch Point Sequence:
CATTGTCTAACT
Flanking Amino Acid:
PVPPLRVTSTNVLSPAPPPP
Intron Amino Acid Position:
859

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
79.4
0.69
1
77.7
31.3
Major BPS
100
1.24
0.5
100
0
Major PPT
83.5
0.75
0.6
80.2
25.3
Minor 5ss
59
0.3
2.2
70
34.4
Minor BPS
51.2
0.12
2.1
73.45
43.5

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000006573
Chromosome:
3

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000006919
77079286 - 77136406
57121