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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_3_77080566_77083097_R

Intron Information:

Intron Rank:
22
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
77080566 - 77083097
Intron Length:
2532

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTATTAACA
5'SS Class:
major
3'SS Sequence:
CCTCTCTTTTTAG|T
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TAATAAT
U12 Branch Point Sequence:
ATAATAATAATA
Flanking Amino Acid:
PPLPPRNIGKVQPSVLGSGI
Intron Amino Acid Position:
805

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
73.8
0.56
1
68.9
35.3
Major BPS
80
0.75
1
78.6
31
Major PPT
81.9
0.72
0.7
80.3
25
Minor 5ss
39.9
-1.1
2.7
50.5
45.4
Minor BPS
46
-0.3
1.8
57.6
35

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000006573
Chromosome:
3

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000006919
77079286 - 77136406
57121