About Basic Search Advanced Search Downloads
Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_3_77087410_77087873_R


Intron Information:

Intron Rank:
19

Intron Class:
major

Intron Phase:
1

Intron Coordinates:
77087410 - 77087873

Intron Length:
464

Sequence Information:

Terminal Dinucleotides:
GT-AG

5'SS Sequence:
TAG|GTAAAAGGG

5'SS Class:
major

3'SS Sequence:
TGATGTAATACAG|C

3'SS Class:
major_PPT

U2 Branch Point Sequence:
TCTTGAT

U12 Branch Point Sequence:
TTACCCTGACTT

Flanking Amino Acid:
LLRGKASIEIANESGETPLD

Intron Amino Acid Position:
659

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev

Major 5ss
78.9
0.68
1
63.2
41.7

Major BPS
83.8
0.84
1
73.6
41.8

Major PPT
66.2
0.36
1.1
58.9
45.2

Minor 5ss
29.2
-2.4
3.4
38.5
46.6

Minor BPS
56
0.27
1.8
75.5
41

Associated Gene:

Gene:

Ensembl Gene ID:

Chromosome:
3

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length

77079286 - 77136406
57121

77079286 - 77136406
57121