Gene Search

About Basic Search Advanced Search Downloads

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_3_77093109_77093217_R

Intron Information:

Intron Rank:

Intron Class:

major

Intron Phase:

Intron Coordinates:

77093109 - 77093217

Intron Length:

109

Sequence Information:

Terminal Dinucleotides:

GT-AG

5'SS Sequence:

AAT|GTGAGTTAC

5'SS Class:

strong_major

3'SS Sequence:

ACTGCCATTTTAG|A

3'SS Class:

major_PPT

U2 Branch Point Sequence:

ATTTAAT

U12 Branch Point Sequence:

AAACATTTAATA

Flanking Amino Acid:

FQAEDEQECQIWTSVLQNSK

Intron Amino Acid Position:

396

Site Scores:

Score

LOD

LOD StDev

Match

Match StDev

Major 5ss

80.3

0.72

76.5

27.8

Major BPS

90.7

1.01

0.7

19.9

Major PPT

67.7

0.4

0.9

63.5

37.5

Minor 5ss

37.5

-1.4

2.9

41.4

Minor BPS

53.2

0.1

1.4

58.64

34.1

Associated Gene:

Gene:

Ensembl Gene ID:

ENSAPLG00000006573

Chromosome:

Associated Transcripts:

Ensembl Transcript ID

Transcript Coordinates

Transcript Length

ENSAPLT00000006919

77079286 - 77136406

57121

ENSAPLT00000047999

77079286 - 77136406

57121