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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_3_77099498_77099610_R

Intron Information:

Intron Rank:
10
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
77099498 - 77099610
Intron Length:
113

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
TGG|GTAAGTACT
5'SS Class:
strong_major
3'SS Sequence:
CCCTTTAAACCAG|A
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTATAAA
U12 Branch Point Sequence:
TCCCCTTTAAAC
Flanking Amino Acid:
RNGSLYKKSDGIRKVWQKRK
Intron Amino Acid Position:
327

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
88.4
0.91
0.9
84.4
33.5
Major BPS
78.6
0.71
1
78.6
31
Major PPT
65.6
0.35
1
59.3
39.7
Minor 5ss
37.9
-1.4
2.7
44.7
42.7
Minor BPS
61.5
0.34
1.4
64.66
41

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000006573
Chromosome:
3

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000006919
77079286 - 77136406
57121
ENSAPLT00000047999
77079286 - 77136406
57121