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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_3_77106832_77108465_R

Intron Information:

Intron Rank:
6
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
77106832 - 77108465
Intron Length:
1634

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GAG|GTAAGATGC
5'SS Class:
strong_major
3'SS Sequence:
ACTGTTTCAACAG|T
3'SS Class:
major_PPT
U2 Branch Point Sequence:
ATTTCAT
U12 Branch Point Sequence:
TAATCATTAATT
Flanking Amino Acid:
RRFFQLQMCEYLLKVNEIKI
Intron Amino Acid Position:
210

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
90.1
0.95
0.8
75.9
34.8
Major BPS
91.2
1.02
0.7
91.7
20.2
Major PPT
71.3
0.48
1
66.2
39.1
Minor 5ss
38.3
-1.3
3.1
50.9
45.7
Minor BPS
71.8
0.76
1.5
83.78
36.5

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000006573
Chromosome:
3

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000047999
77079286 - 77136406
57121
ENSAPLT00000006919
77079286 - 77136406
57121